Transwell Migration and Invasion Assay – the complete breakdown

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Summary

You have heard about the Transwell Migration Assay and the Invasion Assay, but what exactly are they, and importantly, what is the difference? How are they used, what do they tell you about your cells in culture, and how are they best quantified? This blog post will give you the complete breakdown of the assays and answer all of your questions.

What is the Transwell Migration Assay?

The Transwell Migration Assay (or Boyden Chamber assay), is designed to study the movement (migration) of cells from one location to another1,2. It is particularly useful for investigating processes like chemotaxis (movement of cells in response to chemical stimuli), cell motility, and mechanisms of cancer metastasis. The assay goes by the name Transwell Migration Assay, as the insert used is often, but not always, a Transwell insert, which is a permeable support with a porous membrane that separates two chambers.

In a typical migration assay, cells are placed in the upper chamber of a Transwell insert and allowed to migrate through a porous membrane towards a chemoattractant in the lower chamber. The extent of cell movement is then measured, providing insights into the factors that influence cell motility. 

The Transwell migration assay (‘migration assay hereafter) is simpler than an invasion assay, focusing solely on the cells’ ability to move in response to various stimuli. The assay helps researchers to investigate how cells respond to different chemical signals (chemotaxis), evaluate the effects of drugs or treatments on cell movement, and explore the mechanisms underlying disease processes, including cancer metastasis. By analyzing cell migration, researchers can gain valuable information about cellular dynamics and their implications in health and disease.

The cell migration assay protocol in brief:
  • Cells are placed in the upper chamber of a Transwell insert.
  • The lower chamber contains a chemoattractant (a substance that attracts cells).
  • Cells migrate through a porous membrane towards the chemoattractant.
  • The number of cells that have moved to the lower chamber is quantified.
Stained cells ready for the Transwell migration assay or Invasion. assay protocol

What is the Transwell Invasion Assay?

The cell invasion assay is designed to study the ability of cells, particularly cancer cells, to invade through extracellular matrix (ECM) components, which is a critical step in the process of metastasis2. This assay mimics the in vivo environment where cells must degrade and move through the ECM to spread from their original location to other parts of the body. By evaluating the invasive potential of cells, researchers can gain insights into mechanisms of cancer progression, test the effectiveness of potential anti-cancer drugs, and explore factors influencing tissue remodeling and repair. The invasion assay helps elucidate complex biological processes related to cell behavior in pathological conditions and therapeutic contexts.

The invasion assay works by:
  • A layer of Matrigel (a gelatinous protein mixture resembling the ECM) is applied on the porous membrane of a Transwell insert.
  • Cells are placed in the upper chamber, on top of the Matrigel layer.
  • The lower chamber contains a chemoattractant.
  • Cells must degrade the Matrigel and migrate through it to reach the porous membrane and move towards the chemoattractant in the lower chamber.
  • The number of cells that have invaded through the Matrigel and membrane is quantified.
 
Access our webinar Automating Transwell Migration/ Invasion Assay with AI-Based Image Analysis to learn more.

What is the difference between the Migration and Invasion Assays?

The cell invasion assay and the cell migration assay differ primarily in the presence of an extracellular matrix (ECM) barrier and the complexity of the processes they measure. While both assays are used to study cell movement, the cell invasion assay incorporates an additional layer of complexity by introducing an ECM barrier. This makes it more suitable for studying invasive cellular behaviors, particularly in cancer metastasis, where cells penetrate tissue barriers. The invasion assay assesses both the cells’ ability to degrade the ECM and their subsequent movement, providing insights into more invasive and aggressive cell behaviors.
Difference between the Transwell Migration asssay setup and the Invasion Assay.

Differences Between Migration and Invasion Assays

Overview table of differences between the Transwell Migration Assay and Invasion Assay

Data read-out from the Transwell Invasion Assay

From a Transwell invasion assay, you typically obtain quantitative and qualitative data related to the amount and behavior of cells that have successfully invaded through the extracellular matrix (ECM) barrier and migrated to the other side of the membrane.

Calculating the Invasion Ratio

Once the cell experiment has finished, i.e. the cells have invaded through the Transwell insert, you can quantify the Invasion Ratio (also dubbed the Invasion Index or Percentage). This is the ratio of cells that invaded through the ECM to the cells initially placed in the assay. This helps normalize the data across different experiments. To calculate the Invasion Index, first remove non-invading cells from the upper chamber. Next, stain the cells that have migrated to the lower surface of the membrane, using e.g. crystal violet. From here, you have three choices:  
  • Detect degree of invasion by cell confluency
In recent years, cell confluency has become the preferred method to quantify the degree of cell invasion across the membrane. This method is much easier to run from a user perspective, with the benefit of getting much more accurate data, usually. Download this pdf for the full Transwell migration/invasion assay protocol.
   
  • Detect degree of invasion by cell count
This older method is still very much used as it relies on cheap imaging software or even manual counting. You take images of the stained cells and either use software such as ImageJ to count the cells, or you count them manually. The benefit of using cell counting is that you usually have the technology in-hand and it has been much published and is a well-established method3,4. However, there are distinct drawbacks to cell counting in these assays, due to the many(numerate) cells that are to be quantified.  
    • Manual variation: In either manual counting or image analysis, setting the parameters for which to count are done manually, and thus are subject to bias by the user. 
    • Time-consuming: Whether you are to set up the software criteria or count manually, it takes a LOT of time to conduct this method!
 
  • Absorbance or Fluorescence Intensity:
If the invaded cells are stained with a dye or labeled with a fluorescent marker, the intensity of the absorbance or fluorescence can be measured using a plate reader. This provides a relative quantification of the number of invading cells.  

Morphological observations

Qualitative data on cell morphology can be gathered, including cell size, shape, nuclear morphology, cell-matrix interactions, invasion depth, and cytoskeletal organization. Many of these morphological characteristics require further analysis methods, such as immune-staining of cells and ECM proteins and high resolutions imaging.

Morphological data provide valuable information on how cells physically interact with the ECM, the structural adaptations they undergo during invasion, and the mechanisms driving their invasive behavior. Analyzing these features helps in understanding the cellular processes involved in tissue invasion, particularly in the context of cancer metastasis.

Quantifying Matrigel degradation in the Invasion Assay

The degradation of Matrigel during an invasion assay can be analyzed using several methods that focus on assessing the breakdown of the extracellular matrix (ECM) components, including including immunohistochemistry (IHC), immunofluorescence, Enzyme-Linked Immunosorbent Assay (ELISA), and directly by microscopy and image analysis. These methods help to understand the invasive potential of cells and the role of proteolytic enzymes like matrix metalloproteinases (MMPs) in this process.

Method comparison: Migration/Invasion Ratio quantification

Method comparison of how to analyze the transwell migration and invasion assay

If you want to learn more about analyzing the invasion assay using SnapCyte™, see this Case Study: Invasion assay analysis in less than 30 minutes using AI

What is the Transwell vs. the Boyden chamber?

The Transwell and Boyden chambers are both devices used in cell migration and invasion assays, though they are often described in different contexts.

The Transwell chamber features a cell culture insert with a porous membrane separating two compartments: the upper and lower chambers. This design allows researchers to assess cell migration by placing cells in the upper chamber and adding a chemoattractant to the lower chamber. Cells move through the membrane towards the chemoattractant. For invasion assays, the membrane is coated with an extracellular matrix (ECM) component like Matrigel, requiring cells to degrade the ECM before migrating.

The Boyden chamber is historically referred to in earlier research contexts, where the assay is also often called a transmigration assay. It has a similar design with a porous membrane dividing two compartments. The key difference is that the Boyden chamber is considered a precursor to the modern Transwell system, which is now more widely used and standardized in research.

In essence, while both chambers serve similar purposes in studying cell movement and invasive behavior, the Transwell chamber is the contemporary and commonly used device, whereas the Boyden chamber represents an earlier version of the same basic concept.

Illustration of how the Boyden chamber is built

Can I use the invasion assay to measure diapedesis?

The invasion assay, particularly the Transwell invasion assay, can be adapted to study diapedesis, which is the process by which immune cells, such as leukocytes, migrate through the endothelial layer of blood vessels into surrounding tissues. Diapedesis involves cells crossing both the endothelial barrier and the underlying extracellular matrix, making it somewhat analogous to the invasion process. The assay would measure the ability of immune cells to cross both an endothelial cell layer and an underlying matrix, providing insights into their migratory behavior during immune responses.

Key Considerations:
  • ECM Layer: In the context of diapedesis, the extracellular matrix (ECM) coating used in a typical invasion assay should be modified to better mimic the endothelial layer that immune cells naturally cross. This involves using endothelial cells and/or specific ECM components that closely resemble the blood vessel environment.

  • Endothelial Cells: For a more accurate model of diapedesis, culture endothelial cells on the membrane of the Transwell insert to create a barrier that immune cells must traverse, simulating the process of crossing blood vessel walls.

  • Chemotactic Gradients: To effectively study diapedesis, ensure that the appropriate chemotactic gradients (e.g., chemokines) are established to mimic the signals that guide immune cells during the diapedesis process.

Want to know even more about the Invasion Assay?

We hope this blog post explains all that you need to know  about the Transwell Migration and Invasion Assays. If not, send us your question and let’s have a conversation about your protocol and assay needs.


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References

  1. AJ Ridley et al: Cell Migration: integrating signals from front to back. Science 302, 1704-1709. 10.1126/science.1092053
  2. K Hulkower and R Herber: Cell migration and invasion assays as tools for drug discovery. 2011 Mar; 3(1): 107–124. doi: 10.3390/pharmaceutics3010107
  3. HM Stoellinger and AR Alexanian: Modifications to the Transwell Migration/Invasion Assay Method That Eases Assay Performance and Improves the Accuracy. Assay Drug Dev Technol. February/March 2022; 20(2): 75–82. doi: 10.1089/adt.2021.140
  4. CR Justus et al: In vitro Cell Migration and Invasion Assays. J Vis Exp. 2014; (88): 51046. doi: 10.3791/51046

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